The voltage-gated potassium channel gene family

An introduction to the voltage-gated potassium channel gene family

Selective permeation of potassium ions (K⁺) through voltage-dependent potassium (K_v) channels has an important role in setting the resting membrane potential of cells and repolarising the action potential. The voltage-gated potassium channel family is composed of forty members and they are separated into twelve classes K_v1 to K_v12. 

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The major α pore forming subunits of K_v channels are composed of 6 membrane spanning domains (S1-6) that contain a pore (P) loop located between the S5 and S6 domains (Figure ‎1A). These subunits interact to form functional tetrameric channels (Figure 1B). The P loop makes up the ion conduction pathway of the channels and consists of approximately 20 amino acids. The subunits are arranged in such a fashion that the S5-P-S6 subunits face one another (Figure ‎1B), forming the walls of the central water filled pore. The K_vchannels possess a glycine-tyrosine-glycine (GYG) signature motif within the ion conduction pathway, which is thought to confer K⁺ ion selectivity. Mutation to the GYG sequence results in a loss of K⁺ selectivity. The voltage sensitivity of the channels has been attributed to the S4 domains, which contain a large number of positively charged amino acid residues, which respond to a change in membrane potential. 

A number of K_v channels (e.g. some of the K_v1 and K_v7 families) are capable of generating functional heterotetramers between family members, which can affect the electrophysiological characteristics and pharmacology cf. the homotetrameric channel. You can learn more about previous work on K_v1.x tetramers as drug discovery targets in this publication.
(https://chemistry-europe.onlinelibrary.wiley.com/doi/full/10.1002/cmdc.201100600)

Heterotetramerisation can be an important consideration if a structure-based drug discovery approach is adopted, as understanding the topology of the different subunits enables the generation of optimal in silico models.

The electrophysiological properties of K_v channels can vary significantly, even within members of the same family. For example, the rate of inactivation of the K_v1.x channels can vary substantially (Figure 2). 

Figure 2: Representative current traces from Metrion’s K_v1.x panel.

Metrion is highly experienced at developing custom K_v1.x (e.g. K_v1.3, K_v1.5) screening assays to identify state-dependent inhibitors. Metrion has developed screening assays suitable for testing several therapeutic modalities (small molecules, peptides and other biologics) against K_v1.x ion channels on the manual patch-clamp platform and various automated patch-clamp platforms (e.g. QPatch 48). Most assays can be configured to detect state-dependent modulation and deliver information-rich data during the primary structure-activity screening assay (Figure 3). Metrion typically test compounds using a cumulative four-point concentration-response paradigm (Figure 3), but can amend the testing paradigm to reflect clients’ requirements. For example, for slow acting agents such as antibodies or peptides, it might be preferable to use a single-point testing format to enable an accurate determination of block (Figure 4).

  

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Other recommended publications

Posters

More information on Metrion’s K_v1.x screening assays and their use in discovering novel small molecule and peptide toxin inhibitors can be found on the following posters:

• The development of a set of novel small molecule inhibitors of the K_v1.3 ion channel
• A drug discovery collaboration between Japanese pharma and a UK SME CRO successfully developed novel small molecule inhibitors of the K_v1.3 channel to treat autoimmune disease
• Identification of novel scorpion venom peptide inhibitors of the Kv1.3 ion channel and their potential as drug discovery leads for human T-cell mediated disease